Variable Trigonometric Threshold (VTT)
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.. only:: html

Description:
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This package implements the Variable Trigonometric Threshold (VTT) linear classifier. The coding schema is such that it enables it to be used in the `Scikit-Learn`__ pipeline.

	__ http://scikit-learn.org

The mathematical description of the classifier can be seen in:

	"A. Abi-Haidar, J. Kaur, A. Maguitman, P. Radivojac, A. Retchsteiner, K. Verspoor, Z. Wang, and L.M. Rocha [2008]. "`Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks`__". *Genome Biology*. **9**(Suppl 2):S11"

	__ http://cgi.soic.indiana.edu/~rocha/publications/bmc_gb_08.html

Other papers which have used this method:

	"Correia, Rion B., K. N. Chan, & L.M. Rocha [2015]. "`Polarization in the US Congress.`__" The 8th Annual Conference of the Comparative Agendas Project (CAP). Lisbon, Portugal, June 23-24, 2015."

	__ http://cgi.soic.indiana.edu/~rionbr/publications/2015-worldcongress_CAP.pdf

	"A. Lourenço, M. Conover, A. Wong, A. Nematzadeh, F. Pan, H. Shatkay, and L.M. Rocha [2011]."`A Linear Classifier Based on Entity Recognition Tools and a Statistical Approach to Method Extraction in the Protein-Protein Interaction Literature`__". BMC Bioinformatics. 12(Suppl 8):S12."

	__ http://cgi.soic.indiana.edu/~rocha/publications/BMC_BC3.html


	"A. Kolchinsky, A. Abi-Haidar, J. Kaur, A.A. Hamed and L.M. Rocha [2010]. "`Classification of protein-protein interaction full-text documents using text and citation network features.`__" *IEEE/ACM Transactions On Computational Biology And Bioinformatics*, **7**(3):400-411. DOI: doi.ieeecomputersociety.org/10.1109/TCBB.2010.55"

	__ http://cgi.soic.indiana.edu/~rocha/publications/TCBB10.html


Documentation:
---------------

.. toctree::
	:maxdepth: 3

	install
	tutorial
	reference/index
	notes


Indices and tables
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* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`